Nettet15. okt. 2024 · Hi, I was running instrain profile (v1.3.9) with 20 samples. Ten of them ran perfectly, however the other 10 got the following error: TypeError: ufunc 'isnan' not … NettetinStrain is a python program for analysis of co-occurring genome populations from metagenomes that allows highly accurate genome comparisons, analysis of coverage, … 1. InStrain for PacBio longreads enhancement. #104 opened on May 30, …
InStrain — inStrain 1.0.0 documentation
NettetProcessing inStrain results. See Jupyter Notebooks linked above for details on how inStrain results were processed to make figures. Citations and acknowledgements. This work completely depends on the scientists that originally sequenced these genomes and made their data publicly available. For the intra-patient analysis, this includes: NettetI am running inStrain with 700 metagenomes and 3200 sSRGs (dRep 98%).inStrain profile Step 2. Profile scaffolds is profiling splits at a rate of 15 every 5 minutes. With … cleveland clinic video interview
Instrain :: Anaconda.org
Nettet14. mar. 2024 · Is it possible to know the species/strain name · Issue #50 · MrOlm/inStrain · GitHub Hi Dr. Olm, It is very nice to read and understand you newest tool inStrain. I have run it on some of my samples, and one question in my mind right now is whether it is possible to know the strain names that are shared across the samples... Nettet1. apr. 2024 · Error running inStrain when including a genes file · Issue #56 · MrOlm/inStrain · GitHub on Apr 1, 2024 EvolDoc commented on Apr 1, 2024 InStrain does not use the length and coverage values from the header, but it does require that the gene name be the same as the scaffold name plus "_1", "_2", "_3", etc. Nettet25. jan. 2024 · Hi there, I try to install inStrain using conda, ... Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment. Assignees No … cleveland clinic videos on youtube