WebJan 28, 2014 · PRED-TMBB: A web server for predicting the topology of beta-barrel outer membrane proteins. Nucl Acid Res 32, W400–W404. Article CAS Google Scholar Bairoch, A., Apweiler, R. 2000. The SWISSPROT protein sequence database and its supplement TrEMBL in 2000. Nucl Acid Res 28, 45–48. ... WebJul 1, 2004 · The server reports the predicted topology of a given protein, a score indicating the probability of the protein being an outer membrane beta-barrel protein, posterior …
PRED-TMBB2: improved topology prediction and detection
WebApr 8, 2024 · The PRED-TMBB method is based on Hidden Markov Models and is capable of predicting the topology of beta-barrel outer membrane proteins and discriminate them from water-soluble ones. Here, we present an updated version of the method, PRED-TMBB2, with several newly developed features that improve its performance. WebJun 24, 2024 · PRED-TMBB: a web server for predicting the topology of beta-barrel outer membrane proteins. Bagos PG, Liakopoulos TD, Spyropoulos IC, Hamodrakas SJ. Nucleic … is a amylase an enzyme
Consensus computational network analysis for identifying …
WebSep 6, 2016 · Also, the analysis with Pred-TMBB, a method based on a Hidden Markov Model, capable of predicting the transmembrane beta-strands of the Gram-negative bacteria OMP, and of discriminating such proteins from water-soluble ones when screening large datasets, confirms the transmembrane localization of the proteins, and how the amino … WebVancomycin-resistant Staphylococcus aureus (VRSA) is a Gram-positive, facultative aerobic bacterium which is evolved from the extensive exposure of Vancomycin to Methicillin resistant S. aureus (MRSA) that had become the most common cause of hospital and community-acquired infections. Due to the emergence of different antibiotic … WebSep 23, 2024 · Introduction: Iron-regulated outer membrane virulence protein (IrgA) involved in the initial step of iron uptake by binding ferric- iron chelation siderophore that allows the bacterium to extract iron from the environment. IrgA homologue adhesion (Iha) revealed as a novel adherence conferring molecule. In this study, homology modeling, fold recognition … is a an adjective